2-Bedroom Apartments for Rent in Mission Bay Under $3,000

Mission Bay is SF's newest neighborhood — built from scratch on old rail yards around UCSF's Mission Bay campus and Chase Center. Glassy high-rises, the waterfront walk to Oracle Park, and T-Third Muni plus nearby 4th/King Caltrain. Premium rents; expect $3,800+ for a 1BR.

10 listings available — updated June 3, 2026, refreshed every 3 hours

No under $3,000 2-bedrooms in Mission Bay right now — here are the most affordable options nearby.

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Mission BayLandlord
Craigslist

Mission Bay

$3,000/mo
2 bed
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Mission Bay
Zumper

277 N 16th St

$3,400/mo
2 bed2 bath
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Mission BayLandlord
Craigslist

San Francisco

$4,005/mo
2 bed
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Mission BayLandlord
Craigslist

San Francisco

$4,005/mo
2 bed
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Mission Bay
Zumper

708 Long Bridge St #212

$5,500/mo
2 bed2 bath
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Mission Bay
Zillow

325 Berry St APT 725, San Francisco, CA 94158

$6,250/mo
2 bed2 bath1,287 sqft
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Mission Bay
Zillow

255 Berry St APT 512, San Francisco, CA 94158

$6,500/mo
2 bed2 bath1,205 sqft
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Mission BayLandlord
Craigslist

San Francisco

$6,500/mo
2 bed1,205 sqft
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Mission Bay
Zillow

110 Channel St Unit 633, San Francisco, CA 94158

$7,395/mo
2 bed2 bath1,181 sqft
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Mission Bay
Zillow

708 Long Bridge St APT 304, San Francisco, CA 94158

$7,800/mo
2 bed2 bath1,213 sqft
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Frequently asked

How many 2-bedroom apartments are available in Mission Bay right now?

As of June 3, 2026, Rentomatics tracks 10 2-bedroom apartments for rent in Mission Bay under $3,000/month. Listings refresh every 3 hours from Craigslist, Zumper, and other Bay Area sources.

What is the rent for a 2-bedroom in Mission Bay?

Among current Rentomatics listings, 2-bedroom apartments in Mission Bay start at $3,000/month, with an average of $5,436 and a median of $5,875/month. Prices reflect 10 active listings updated June 3, 2026.

How often are Rentomatics listings updated?

Rentomatics refreshes listings every 3 hours from Craigslist, Zumper, and other Bay Area rental sources. Stale listings are removed within 5 days of last sighting.

Does Rentomatics show broker fees?

Yes. Every Rentomatics listing displays whether a broker fee applies, and users can filter to show only no-fee apartments.

What is Mission Bay like?

Mission Bay is SF's newest neighborhood — built from scratch on old rail yards around UCSF's Mission Bay campus and Chase Center. Glassy high-rises, the waterfront walk to Oracle Park, and T-Third Muni plus nearby 4th/King Caltrain. Premium rents; expect $3,800+ for a 1BR.

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